Basics in bioinstrumentation
BIOENG-421 / 4 credits
Teacher: Merten Christoph
Language: English
Withdrawal: It is not allowed to withdraw from this subject after the registration deadline.
Summary
This combined practical and theoretical course will provide the basics in bioinstrumentation, including the construction of a droplet-microfluidic workstation for high-throughput, single-cell analysis. Many of the learned concepts are equally applicable to other widely used lab instruments.
Content
This interdisciplinary course is based on lectures covering the theoretical aspects and introducing common design principles in bio instrumentation.
In parallel, the students work in teams to present the basic working principles of an instrument of their choice (to be approved) and to build a droplet microfluidic work station from the ground up. A detailed and comprehensively illustrated protocol (including animations) will help to successfully implement all practical tasks.
Keywords
- High throughput fluorescence analysis
- Single-cell assays
- Microfluidics
- System engineering
- Hands-on practice
- LabVIEW control software
Learning Prerequisites
Required courses
none
Learning Outcomes
By the end of the course, the student must be able to:
- Design an instrument converting a cellular feature (e.g. an enzymatic activity or the presence of a surface receptor) into an electric signal that can be quantified and processed to provide active feedback loops (e.g. to trigger cell sorting)
- Conduct microfluidic experiments
- Construct a prototype and characterize the performance
- Have basic knowledge about other types of lab equipment
- Describe the basic working principles of other lab equipment
Transversal skills
- Collect data.
- Make an oral presentation.
- Plan and carry out activities in a way which makes optimal use of available time and other resources.
- Set objectives and design an action plan to reach those objectives.
- Communicate effectively with professionals from other disciplines.
- Write a scientific or technical report.
Teaching methods
- Teaching is done through interactive lectures, including case studies presented by the students
- In parallel, the students go through a hands-on practical session every week ("learning by doing"), comprising the construction of a fully functional bioinstrument
Expected student activities
Prepare a blueprint for a droplet microfluidic workstation, based on a comprehensive protocol
Present a bioinstrument of your choice (to be approved), based on comprehensive literature search
Construct a functional bioinstrument, collect data, present results in oral and written form
Assessment methods
Presentation of a bioinstrument of your choice (to be approved; Group activity, 30%)
Construction of a fully functional microfluidic instrument, presentation of experimental results (Group activity; 30%), submission of a written report (Group activity, 20%)
Q & A sessions with individual students at the very end of the course (Individual activity, 20%)
Supervision
| Office hours | Yes |
| Assistants | Yes |
| Forum | Yes |
Resources
Notes/Handbook
Protocols, slides and literature will be made available on Moodle
In the programs
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional
- Semester: Fall
- Number of places: 18
- Exam form: During the semester (winter session)
- Subject examined: Basics in bioinstrumentation
- Lecture: 1 Hour(s) per week x 14 weeks
- Exercises: 1 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Labs: 2 Hour(s) per week x 14 weeks
- Type: optional