Practical - Waszak Lab
BIO-632 / 1 credit
Teacher(s): Covato Carmelo, Waszak Sebastian Martin
Language: English
Remark: Open to max. 4 students. 3-day Block course, every year in January. To register, contact EDMS Administration.
Frequency
Every year
Summary
Introduction to imaging-based single-cell genomics and computational methods for single-cell image analysis.
Content
Theoretical:
- Introduction to imaging-based single-cell genomics
- Introduction to computer vision for microscopy
- Introduction to AI for single-cell image analysis
Practical:
- Sample & slide preparation for multiplex imaging
- Data acquisition (multiplex staining & imaging)
- Data preprocessing & quality control
- Data analysis (cell segmentation, quantification, visualization)
Note
Please note that you are not allowed to inscribe in your own group!
Keywords
Imaging-based single-cell genomics; computer vision for microscopy; AI in single-cell genomics
Learning Prerequisites
Required courses
Introduction to microscopy; laboratory work; genomics
Learning Outcomes
By the end of the course, the student must be able to:
- prepare samples for multiplex single-cell genomics
- process and quality-control hyperplex imaging data
- perform single-cell analysis to quantify protein/gene expression
- identify cell states
- visualize results
In the programs
- Exam form: Oral (session free)
- Subject examined: Practical - Waszak Lab
- Courses: 4 Hour(s)
- TP: 20 Hour(s)
- Type: optional