CH-413 / 3 crédits

Enseignant: Steinauer Angela

Langue: Anglais


Summary

This course concerns modern bioanalytical techniques to investigate biomolecules both in vitro and in vivo, including recent methods to image, track and manipulate single molecules. We cover the basic principles of the respective methods and discuss examples from the current scientific literature.

Content

Techniques to monitor the function of single biomolecules and complexes

- Single molecule fluorescence spectroscopy (FRET, confocal and total internal reflection fluorescence microscopy)

- Force spectroscopy to monitor function of single proteins and cells

- Microscopy beyond the diffraction limit: Super-resolution microscopy

Surface sensors to elucidate and quantify molecular interactions

- Immobilizing biopolymers on surfaces

- Optical & electrical detection techniques

Development and application of microfluidic and nanofluidic sensor devices

- Miniaturization of analytical techniques: Lab on a chip

- Chemical and biochemical sensors

- Next-generation DNA sequencing approaches

Engineered biomolecules to manipulate cells or as drug delivery vehicles

- Nano-containers for drug delivery vectors

- DNA based self-assembly and nanofabrication of complex structures

 

Keywords

Nanobiotechnology, biophysics, sensors, single-molecule, fluroescence, FRET, drug delivery, DNA origami, lab-on-a-chip, super-resolution microscopy, force spectroscopy

 

Learning Prerequisites

Required courses

Biochemistry I and II

Molecular and Cellular Biophysics I and II

Important concepts to start the course

Biomolecular absorption and fluorescence

General biochemistry

Learning Outcomes

By the end of the course, the student must be able to:

  • Investigate the primary literature of a research field
  • Interpret the primary literature of a research field
  • Identify an unanswered, tracable problem
  • Formulate a specific research question
  • Hypothesize testable predictions from the gap identified
  • Contextualise the proposed work within the state of the art
  • Justify the proposed work's significance and originality
  • Choose for the proposed work
  • Design experiments capable of distinguishing between hypotheses
  • Anticipate the main pitfalls
  • Propose alternative strategies and contignency plans
  • Present the proposal orally
  • Respond to critique constructively

Transversal skills

  • Make an oral presentation.
  • Write a literature review which assesses the state of the art.
  • Use a work methodology appropriate to the task.
  • Communicate effectively with professionals from other disciplines.
  • Demonstrate the capacity for critical thinking
  • Demonstrate a capacity for creativity.
  • Take feedback (critique) and respond in an appropriate manner.

Assessment methods

Oral presentation 40%

Final project (research proposal) 60%

 

 

Resources

Bibliography

Nanobiotechnology, Niemeyer & Merkin (Wiley 2004)

Introduction to bioMEMS, Folch (CRC press, 2012)

 

Ressources en bibliothèque

Notes/Handbook

Handouts and literature references distributed in class

 

Moodle Link

Dans les plans d'études

  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel
  • Semestre: Printemps
  • Forme de l'examen: Pendant le semestre (session d'été)
  • Matière examinée: Nanobiotechnology
  • Cours: 2 Heure(s) hebdo x 14 semaines
  • Exercices: 1 Heure(s) hebdo x 14 semaines
  • Type: optionnel

Semaine de référence

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