Coursebooks

Practical - Bucher Lab

BIO-609

Lecturer(s) :

Bucher Philipp

Language:

English

Frequency

Every year

Remarque

3-day Block course, every year in January. To register, contact EDMS Administration 

Summary

Explorative analysis of in vivo transcription factor binding sites using public ChIP-seq data and web-based analysis tools.

Content

The ChIP-seq server is a web-based bioinformatics analysis platform developed and maintained by the Bucher group. It offers access to a large database of public data. At the beginning of the course, each student will select a ChIP-seq data sample from the ChIP-seq server menu. The subsequent analysis of the data sample will focus on the following tasks:

During the work, students will familiarize themselves with a number of in-house developed and external bioinformatics resources:  ChIP-seq server, Signal Search analysis (SSA), PWMTools , MEME-ChIP, GREAT and Nebula.

At the end of the course, each student will summarize the results obtained in a research paper-like format.

 

Resources

Websites

In the programs

Reference week

 
      Lecture
      Exercise, TP
      Project, other

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  • Autumn semester
  • Winter sessions
  • Spring semester
  • Summer sessions
  • Lecture in French
  • Lecture in English
  • Lecture in German